Levels: Primary, Middle, High, Other
| Name | Level |
|---|---|
| A M Yealey Elementary School | Primary |
| Boone County High School | High |
| Burlington Elementary School | Primary |
| Camp Ernst Middle School | Middle |
| Charles H. Kelly Elementary School | Primary |
| Chester Goodridge Elementary School | Primary |
| Conner High School | High |
| Conner Middle School | Middle |
| Erpenbeck Elementary School | Primary |
| Florence Elementary School | Primary |
| Gray Middle School | Middle |
| Hillard Collins Elementary School | Primary |
| Larry A. Ryle High School | High |
| Longbranch Elementary School | Primary |
| New Haven Elementary School | Primary |
| North Pointe Elementary School | Primary |
| Ockerman Elementary School | Primary |
| Ockerman Middle School | Middle |
| Randall K. Cooper High School | High |
| Rector A. Jones Middle School | Middle |
| Shirley Mann Elementary School | Primary |
| Stephens Elementary School | Primary |
| Walton-Verona Elementary School | Primary |
| Walton-Verona High School | High |
| Walton-Verona Middle School | Middle |
| Name | Level |
|---|---|
| Boone County Alternative Center | Other/Ungraded |
Levels: Primary, Middle, High, Other
Levels: Elementary School, Secondary School, Other - mixed grades
| Name | Level |
|---|---|
| Heritage Academy | Mixed Grades |
| St. Joseph Academy | Elementary |
| Zion Christian Academy | Elementary |
| Name | Level |
|---|---|
| Little Red School House | Elementary |
| Rainbow Child Care Center | Elementary |
Levels: Elementary School, Secondary School, Other - mixed grades
